Genetic determinants of infectious disease susceptibility 2

Supplementary Table 1: Association results and genotype counts of 251 SNPs (p-values < 0.05) from stages 1 and 2 of the Indonesian study that were carried forward to stage 3 Russian study of the TB GWAS.
SNP Location (Chr) Gene Risk allele Allele frequency controls HWE p Cases Genotype count Controls genotype count Trend p OR Cases Genotype count Controls genotype count CMH p OR Risk allele Allele frequency controls HWE p Cases Genotype count Controls genotype count CMH p OR CMH p OR
rs10497225 2 SLC4A10 A 0.04 1 1/14/93 0/5/110 0.01095 3.60 1.30 10.00 3/64/532 0/30/510 0.0000152 2.36 1.58 3.52 A 0.000692329 1 0/3/1830 0/2/1776 #N/A #N/A #N/A #N/A #N/A #N/A #N/A #N/A
rs9289104 3 IGSF11 A 0.30 0.3339 6/35/67 13/48/54 0.01628 0.59 0.38 0.90 39/246/314 66/230/244 0.0000483 0.71 0.60 0.84 A 0.351842 0.1062 224/848/765 234/777/763 0.8888 1.01 0.91 1.11 0.05556 0.92 0.85 1.00
rs8109169 19 N/A G 0.02 1 0/8/99 0/0/115 0.002821 NA NA NA 1/27/571 0/10/530 0.0001983 3.46 1.72 6.96 G 0.00276625 5.193E-18 4/0/1833 6/0/1772 #N/A #N/A #N/A #N/A #N/A #N/A #N/A #N/A
rs1420384 2 SP5 C 0.18 0.1471 7/41/60 3/31/81 0.01516 1.78 1.12 2.84 27/193/379 18/135/387 0.0002163 1.44 1.19 1.76 C 0.316685 0.6603 192/784/861 181/759/837 0.8098 1.01 0.92 1.12 0.0582 1.09 1.00 1.19
rs10490131 2 LRP2 G 0.39 0.5761 20/58/30 11/44/60 0.0002942 2.06 1.40 3.05 96/297/206 74/243/223 0.0004109 1.32 1.13 1.54 G 0.179601 0.8148 65/503/1267 60/543/1170 0.1106 0.91 0.80 1.02 0.3665 1.05 0.95 1.15
rs2185080 1 LAX1 A 0.17 0.219 6/44/57 4/27/84 0.004655 1.98 1.23 3.16 17/186/397 15/125/395 0.0005453 1.43 1.17 1.75 A 0.336056 0.2658 189/848/796 192/817/769 0.7752 0.99 0.89 1.09 0.2113 1.06 0.97 1.16
rs2172633 11 MICALCL G 0.44 0.5453 16/57/35 40/45/30 0.007645 0.59 0.40 0.86 102/297/200 115/277/148 0.0007386 0.77 0.66 0.90 A 0.319502 0.359 172/806/859 198/764/816 0.2312 0.94 0.85 1.04 0.4009 1.04 0.95 1.13
rs7684676 4 C4orf32 G 0.33 0.3018 12/42/54 21/55/39 0.01348 0.60 0.41 0.89 57/252/289 74/236/229 0.0007622 0.76 0.65 0.89 G 0.378079 0.7229 266/873/697 244/839/694 0.4222 1.04 0.95 1.14 0.3032 0.96 0.88 1.04
rs4764719 12 C12orf42 A 0.12 1 0/35/73 0/17/98 0.001867 2.42 1.31 4.47 12/137/450 5/100/435 0.000788 1.50 1.18 1.90 A 0.164454 1 54/492/1291 48/493/1237 0.7897 0.98 0.87 1.11 0.1776 1.08 0.97 1.20
rs10493797 1 HS2ST1 C 0.35 0.2797 27/43/38 14/44/57 0.006244 1.79 1.22 2.63 73/297/226 51/248/238 0.0009836 1.30 1.11 1.53 C 0.345739 0.7518 221/842/773 204/807/767 0.4702 1.04 0.94 1.14 0.0195 1.10 1.02 1.20
rs10519650 15 NDNL2 G 0.27 0.756 9/36/63 15/53/47 0.01386 0.59 0.39 0.89 35/229/335 48/221/271 0.001372 0.76 0.64 0.90 G 0.0993084 0.2025 27/334/1475 20/290/1469 0.06609 1.16 0.99 1.35 0.4182 0.95 0.85 1.07
rs1857909 11 UEVLD A 0.03 0.6157 0/2/106 0/11/104 0.01402 0.19 0.04 0.85 0/29/570 0/46/494 0.001388 0.49 0.31 0.76 A 0.1005 1 25/322/1481 17/317/1435 0.7237 1.03 0.88 1.20 0.4533 0.95 0.82 1.09
rs10509345 10 USP54 G 0.16 1 1/16/91 4/35/76 0.001725 0.40 0.22 0.71 13/146/440 16/158/366 0.001529 0.71 0.58 0.88 G 0.0525879 0.2743 4/169/1662 3/197/1578 0.09103 0.84 0.68 1.03 0.0006019 0.77 0.67 0.90
rs949593 12 TRHDE C 0.20 0.3743 10/32/66 1/30/84 0.008629 1.96 1.21 3.19 33/191/375 20/151/369 0.00155 1.36 1.12 1.65 C 0.231132 0.7457 87/636/1107 106/644/1024 0.04575 0.89 0.80 1.00 0.8759 0.99 0.90 1.09
rs10519651 15 NDNL2 G 0.27 0.7551 9/36/63 14/54/47 0.01705 0.60 0.40 0.91 36/226/335 48/220/271 0.001691 0.76 0.64 0.90 G 0.0993075 0.2017 27/334/1475 20/289/1465 0.06577 1.16 0.99 1.35 0.4437 0.96 0.85 1.07
rs2133294 12 ASCL1 C 0.14 1 1/38/69 0/23/92 0.005717 2.05 1.18 3.55 13/159/427 8/115/417 0.001709 1.42 1.14 1.77 C 0.27953 0.14 143/746/948 150/689/939 0.7928 1.01 0.91 1.12 0.1145 1.08 0.98 1.18
rs952303 5 RANBP3L A 0.44 1 29/54/25 15/50/50 0.0003815 2.02 1.38 2.95 116/318/165 96/263/181 0.001757 1.27 1.09 1.48 A 0.299972 0.005335 159/795/882 181/692/903 0.5477 1.03 0.93 1.14 0.02618 1.10 1.01 1.20
rs424880 12 N/A C 0.25 0.5351 9/53/46 4/46/65 0.01997 1.60 1.05 2.42 37/248/315 24/192/319 0.001766 1.32 1.11 1.57 C 0.0167405 0.5494 0/46/1790 1/73/1704 0.004517 0.59 0.41 0.85 0.113 1.13 0.97 1.33
rs1425567 9 OR13D1 C 0.39 0.9293 7/55/46 20/56/39 0.02658 0.66 0.44 0.97 77/291/232 94/263/178 0.001832 0.78 0.67 0.91 C 0.349654 0.6803 206/838/793 225/828/725 0.08141 0.92 0.83 1.01 0.001924 0.88 0.81 0.95
rs10517861 4 SRD5A2L2 G 0.35 0.6943 20/54/34 11/51/53 0.01002 1.66 1.13 2.44 88/265/246 54/241/245 0.001893 1.28 1.10 1.50 G 0.112203 1 24/383/1429 20/340/1418 0.1607 1.11 0.96 1.29 0.001629 1.19 1.07 1.32
rs10494728 1 KCNT2 G 0.32 0.7741 6/49/53 18/60/37 0.001965 0.55 0.37 0.82 54/253/292 61/247/232 0.001895 0.78 0.66 0.91 G 0.38005 0.6485 276/868/692 252/823/703 0.2448 1.06 0.96 1.16 0.5738 0.98 0.90 1.06
rs6470446 8 N/A C 0.38 0.9287 11/40/57 19/59/37 0.003486 0.55 0.37 0.82 82/268/249 88/258/194 0.002341 0.79 0.67 0.92 C 0.113957 0.653 21/357/1457 27/370/1379 0.1596 0.90 0.78 1.04 0.001816 0.84 0.76 0.94
rs10484059 14 C14orf177 G 0.04 0.6471 0/7/101 2/17/96 0.01391 0.33 0.14 0.80 0/41/558 2/52/486 0.002372 0.57 0.39 0.82 G 0.107726 0.396 30/327/1478 25/341/1410 0.5208 0.95 0.82 1.11 0.08037 0.88 0.77 1.02
rs10517859 4 SRD5A2L2 C 0.35 0.624 19/54/34 11/51/52 0.0163 1.60 1.09 2.36 89/265/245 54/242/243 0.002436 1.28 1.09 1.50 C 0.112725 1 26/382/1429 20/341/1417 0.1433 1.12 0.96 1.29 0.001676 1.19 1.07 1.32
rs9306509 22 LOC388915 A 0.21 0.481 7/34/63 4/22/87 0.01223 1.96 1.19 3.24 38/196/366 22/159/354 0.002613 1.34 1.11 1.61 A 0.170911 0.9313 56/540/1239 48/487/1243 0.1269 1.10 0.97 1.24 0.003249 1.17 1.05 1.29
rs2181139 9 ALDH1B1 A 0.25 0.6622 2/34/70 4/52/59 0.02714 0.62 0.39 0.98 36/200/358 37/217/280 0.002691 0.76 0.64 0.91 A 0.232143 0.3577 94/650/1092 106/627/1043 0.4265 0.96 0.86 1.07 0.02335 0.90 0.82 0.99
rs502131 18 BRUNOL4 A 0.07 0.1287 1/19/87 0/8/107 0.007056 3.02 1.31 6.97 7/87/505 4/58/478 0.002717 1.57 1.17 2.12 A 0.145528 0.8486 32/471/1332 36/444/1296 0.9339 1.01 0.88 1.15 0.1988 1.08 0.96 1.22
rs9899503 17 ACCN1 G 0.06 0.6605 0/27/81 0/11/104 0.002187 2.84 1.37 5.89 4/79/516 2/54/484 0.003033 1.59 1.17 2.16 G 0.153868 0.4707 38/451/1306 48/447/1187 0.08601 0.89 0.78 1.02 0.7122 0.98 0.87 1.10
rs4085896 13 MTIF3 G 0.31 0.4934 4/36/68 12/47/56 0.01246 0.57 0.37 0.88 46/253/301 54/244/237 0.003153 0.78 0.66 0.92 G 0.0390149 0.005388 3/135/1699 8/125/1644 0.8132 0.97 0.77 1.23 0.009587 0.84 0.73 0.96

rs2024787 6 RUNX2 A 0.21 0.904 2/32/74 9/44/62 0.008927 0.54 0.34 0.86 25/184/390 29/191/320 0.003213 0.76 0.63 0.91 A 0.169803 0.4121 49/505/1282 60/504/1213 0.1951 0.92 0.82 1.04 0.006778 0.87 0.78 0.96
rs10491876 9 TUSC1 A 0.29 0.1603 6/48/54 20/47/48 0.02666 0.63 0.42 0.94 42/239/317 59/216/260 0.003238 0.78 0.66 0.92 A 0.12046 0.41 26/413/1396 19/366/1387 0.09415 1.13 0.98 1.30 0.5085 0.96 0.87 1.07
rs1983191 9 DMRT2 G 0.40 0.3798 11/48/49 27/55/33 0.001549 0.53 0.36 0.78 86/292/221 102/254/184 0.003322 0.80 0.68 0.93 G 0.408324 0.118 291/900/646 320/831/628 0.3869 0.96 0.87 1.05 0.02289 0.91 0.84 0.99
rs10490595 2 CREB1 G 0.25 1 11/50/47 4/37/74 0.0009112 2.06 1.34 3.17 36/240/322 28/192/320 0.003336 1.30 1.09 1.55 G 0.447703 0.388 352/944/539 345/898/536 0.8019 1.01 0.92 1.11 0.1127 1.07 0.98 1.16
rs10502875 18 ST8SIA5 A 0.34 0.6968 23/60/25 10/49/56 0.00002973 2.25 1.53 3.32 78/271/250 61/234/245 0.003378 1.27 1.08 1.48 A 0.0730493 0.4816 10/251/1575 11/235/1532 0.8056 1.02 0.86 1.22 0.01845 1.15 1.02 1.30
rs10516402 4 KCNIP4 G 0.31 0.2087 6/36/66 11/53/51 0.01422 0.59 0.39 0.90 41/268/289 67/227/246 0.003392 0.78 0.67 0.92 A 0.492667 0.6017 458/902/476 433/877/468 0.663 1.02 0.93 1.12 0.07073 0.93 0.86 1.01
rs4660918 1 C1orf190 G 0.20 0.4685 4/42/62 3/26/86 0.01119 1.86 1.14 3.04 31/196/371 20/155/365 0.003499 1.33 1.10 1.61 G 0.26131 0.5773 126/715/992 123/670/977 0.6352 1.03 0.92 1.14 0.06553 1.09 0.99 1.20
rs868745 4 KCNIP4 A 0.49 0.6654 17/50/41 24/64/27 0.03352 0.67 0.46 0.98 126/312/162 146/262/127 0.003515 0.80 0.69 0.93 T 0.399197 0.05186 304/887/644 291/806/679 0.1502 1.07 0.98 1.18 0.005658 1.12 1.03 1.21
rs722760 2 CREB1 A 0.25 1 11/50/47 4/37/74 0.0009112 2.06 1.34 3.17 36/240/323 28/192/320 0.003569 1.30 1.09 1.54 A 0.4553 0.4441 377/919/540 376/865/536 0.9448 1.00 0.91 1.10 0.1566 1.06 0.98 1.15
rs722761 2 CREB1 G 0.25 1 11/50/47 4/37/74 0.0009112 2.06 1.34 3.17 36/240/322 28/192/319 0.003587 1.30 1.09 1.54 G 0.455137 0.4734 376/919/540 375/866/535 0.9638 1.00 0.91 1.10 0.1628 1.06 0.98 1.15
rs2974574 5 GRAMD3 C 0.01 1 0/1/107 0/7/108 0.03836 0.15 0.02 1.21 0/7/593 0/16/518 0.003616 0.32 0.14 0.72 C 0.292636 0.6847 157/781/899 150/719/906 0.2981 1.06 0.95 1.17 0.5453 1.03 0.93 1.14
rs10497385 2 ITGA6 C 0.23 0.4934 5/31/72 12/49/54 0.002682 0.50 0.32 0.78 24/215/360 37/197/305 0.003624 0.77 0.64 0.92 C 0.0769657 1 10/253/1573 11/261/1504 0.3877 0.93 0.78 1.10 0.008226 0.85 0.75 0.96
rs1107251 3 PDZRN3 A 0.19 0.3528 1/30/77 9/36/70 0.02366 0.57 0.35 0.92 18/168/414 26/167/341 0.003724 0.75 0.62 0.91 A 0.0586445 0.4028 3/205/1628 4/205/1570 0.6588 0.96 0.79 1.16 0.01765 0.85 0.74 0.97
rs1882074 7 ELMO1 G 0.02 1 0/7/101 0/1/114 0.02432 7.67 0.94 62.86 2/32/566 0/17/518 0.00397 2.21 1.27 3.85 G 0.109635 0.3944 27/348/1461 25/340/1411 0.9647 1.00 0.86 1.16 0.4463 1.06 0.92 1.22
rs967588 6 RUNX2 A 0.21 0.904 2/33/72 9/44/62 0.01443 0.57 0.36 0.90 25/184/390 29/191/320 0.004035 0.76 0.64 0.92 A 0.169388 0.3673 49/503/1284 60/503/1214 0.1849 0.92 0.81 1.04 0.007041 0.87 0.78 0.96
rs401443 16 CDH13 A 0.34 0.4565 9/39/60 20/43/52 0.0394 0.63 0.42 0.95 68/249/282 75/240/220 0.004236 0.79 0.68 0.93 A 0.360872 0.4442 228/834/770 250/809/710 0.1111 0.92 0.84 1.02 0.004622 0.89 0.82 0.96
rs2070527 21 ERG A 0.36 0.2337 8/46/53 22/48/45 0.01811 0.61 0.41 0.91 68/273/259 85/239/211 0.004267 0.80 0.68 0.93 A 0.281224 0.2003 145/728/962 133/747/896 0.4708 0.96 0.87 1.07 0.02924 0.91 0.83 0.99
rs2189972 7 N/A A 0.44 0.5445 14/55/39 35/46/33 0.01118 0.60 0.41 0.88 104/297/198 119/261/160 0.004454 0.80 0.69 0.93 G 0.219424 0.0007939 83/625/1129 114/567/1096 0.3865 0.95 0.85 1.06 0.3216 1.05 0.96 1.15
rs1552418 6 RIMS1 C 0.50 0.1221 10/62/29 37/49/23 0.0008372 0.53 0.36 0.78 145/284/170 152/252/136 0.004492 0.80 0.69 0.93 G 0.311514 0.08803 184/766/885 191/735/852 0.6441 0.98 0.88 1.08 0.2416 1.05 0.97 1.14
rs1154273 3 CCDC80 A 0.25 0.3365 13/46/49 1/45/69 0.001654 1.95 1.27 2.99 41/236/322 25/203/312 0.004668 1.28 1.08 1.53 C 0.483532 0.6352 420/930/486 413/898/466 0.7923 0.99 0.90 1.08 0.1183 1.07 0.98 1.16
rs9295740 6 HIST1H2BL A 0.15 0.04718 0/25/80 2/39/74 0.0366 0.59 0.34 1.00 12/140/446 9/166/364 0.004731 0.74 0.60 0.91 A 0.14946 0.264 42/463/1331 46/441/1290 0.9109 0.99 0.87 1.13 0.1122 0.91 0.82 1.02
rs2753369 1 CLCA4 C 0.15 0.5232 3/18/86 1/41/73 0.02494 0.55 0.32 0.94 6/145/449 16/141/378 0.005115 0.74 0.60 0.91 C 0.495012 0.7041 463/903/471 433/878/461 0.6411 1.02 0.93 1.12 0.5053 0.97 0.89 1.06
rs10491697 9 SMARCA2 G 0.35 0.07922 10/42/56 20/53/42 0.01158 0.59 0.40 0.88 57/282/259 83/232/224 0.005244 0.80 0.68 0.94 G 0.204206 0.8837 78/596/1161 72/580/1127 0.8591 1.01 0.90 1.13 0.1293 0.93 0.85 1.02
rs9322676 6 GRIK2 A 0.10 0.1293 01/08/99 1/22/92 0.0239 0.42 0.19 0.89 3/96/499 3/114/422 0.005251 0.69 0.53 0.90 A 0.0161781 1 1/59/1777 0/56/1723 0.7734 1.06 0.73 1.52 0.03459 0.80 0.65 0.98
rs10503905 8 NRG1 A 0.20 0.3734 6/25/77 7/49/59 0.01112 0.55 0.35 0.87 24/171/404 28/175/337 0.005443 0.77 0.64 0.92 A 0.0448629 1 3/164/1668 3/148/1625 0.534 1.07 0.86 1.34 0.08253 0.88 0.76 1.02
rs1354151 3 IGSF11 G 0.36 0.149 21/53/34 12/52/51 0.01782 1.59 1.08 2.34 92/271/236 54/255/225 0.005544 1.25 1.07 1.46 A 0.480088 0.8869 425/896/516 417/892/470 0.3993 0.96 0.88 1.05 0.03301 1.09 1.01 1.18
rs6137130 20 C20orf74 G 0.17 0.6659 3/23/82 5/42/68 0.01278 0.53 0.32 0.87 17/150/432 16/166/358 0.005612 0.75 0.62 0.92 G 0.0622407 0.5467 15/195/1627 5/215/1558 0.7352 0.97 0.80 1.17 0.03001 0.86 0.75 0.99
rs413114 19 N/A G 0.37 0.1554 16/53/39 8/47/60 0.007017 1.72 1.16 2.56 86/291/221 58/261/220 0.005838 1.25 1.07 1.46 G 0.340205 0.7945 198/819/820 215/814/748 0.07787 0.92 0.83 1.01 0.9871 1.00 0.92 1.09
rs2058995 7 STK31 C 0.16 0.1881 2/27/79 2/46/67 0.03291 0.60 0.37 0.99 17/143/438 22/149/363 0.005849 0.75 0.61 0.92 C 0.260653 0.3546 124/714/998 127/668/983 0.8025 1.01 0.91 1.13 0.2996 0.95 0.87 1.05
rs378451 19 N/A G 0.37 0.1314 16/53/39 8/47/60 0.007017 1.72 1.16 2.56 86/291/221 58/262/220 0.006061 1.25 1.07 1.46 G 0.34057 0.8759 198/819/820 217/814/748 0.06745 0.91 0.83 1.01 0.9375 1.00 0.92 1.08

rs241239 1 AJAP1 G 0.01 1 0/10/95 0/1/113 0.003425 11.35 1.44 89.44 0/16/584 0/8/527 0.006128 2.74 1.29 5.83 G 0.284154 0.8122 162/751/924 137/706/936 0.1106 1.09 0.98 1.20 0.04407 1.11 1.00 1.23
rs10504038 8 ZMAT4 G 0.44 0.1313 32/45/31 19/55/41 0.04217 1.50 1.03 2.18 131/294/175 103/243/188 0.006147 1.24 1.06 1.44 A 0.391027 0.1205 289/876/670 280/810/686 0.3624 1.05 0.95 1.15 0.4996 0.97 0.90 1.05
rs10498202 2 N/A C 0.16 0.2326 6/36/63 1/28/86 0.007173 1.98 1.20 3.26 16/178/405 15/128/392 0.006187 1.33 1.08 1.63 C 0.295732 1 179/734/918 153/736/888 0.6483 1.02 0.93 1.13 0.1018 1.08 0.99 1.18
rs831460 11 NAV2 G 0.14 0.4358 4/32/71 2/20/93 0.01575 1.97 1.14 3.40 18/151/431 11/115/409 0.006308 1.35 1.09 1.68 G 0.181831 0.6848 59/565/1213 53/526/1200 0.3547 1.06 0.94 1.19 0.03373 1.12 1.01 1.24
rs10495455 1 FMN2 A 0.04 0.3874 0/4/104 1/16/98 0.004371 0.22 0.07 0.67 1/43/555 0/56/484 0.006368 0.60 0.41 0.87 A 0.213001 1 80/605/1152 84/607/1087 0.3099 0.94 0.84 1.06 0.07606 0.91 0.81 1.01
rs10512292 9 N/A G 0.14 1 2/36/70 0/21/94 0.002609 2.26 1.29 3.98 12/152/434 8/116/414 0.006401 1.36 1.09 1.70 G 0.022419 1 1/84/1752 0/76/1700 0.5623 1.10 0.80 1.50 0.01044 1.27 1.06 1.52
rs10511943 9 FRMPD1 A 0.05 0.2688 0/18/90 0/7/108 0.01233 2.90 1.19 7.08 1/72/525 2/43/489 0.006513 1.61 1.14 2.26 A 0.243916 0.9485 114/676/1047 103/654/1022 0.686 1.02 0.92 1.14 0.2142 1.07 0.96 1.18
rs9319943 18 GRP G 0.18 0.1747 2/23/81 4/41/70 0.01615 0.54 0.32 0.90 13/173/413 26/161/353 0.006661 0.76 0.63 0.93 G 0.197645 0.1279 73/595/1167 56/574/1145 0.3695 1.06 0.94 1.18 0.559 0.97 0.88 1.07
rs1329710 6 SUPT3H A 0.26 0.7449 6/34/68 11/50/54 0.01842 0.59 0.39 0.91 38/212/350 42/210/283 0.006799 0.79 0.66 0.94 A 0.476303 0.9241 432/913/488 389/882/504 0.1511 1.07 0.98 1.17 0.998 1.00 0.92 1.09
rs2456923 6 RP3-402H5.2 A 0.33 1 17/49/42 5/46/64 0.001391 1.94 1.29 2.91 73/261/265 51/232/257 0.006816 1.25 1.06 1.47 A 0.43468 0.4399 358/881/597 327/890/560 0.9664 1.00 0.91 1.10 0.1644 1.06 0.98 1.15
rs7981602 13 STARD13 C 0.17 0.04751 1/43/63 0/31/84 0.02017 1.71 1.04 2.82 24/176/398 19/128/388 0.00686 1.32 1.08 1.61 C 0.350416 0.098 197/869/767 242/783/752 0.3045 0.95 0.86 1.05 0.8276 1.01 0.93 1.10
rs7871948 9 FRMPD1 G 0.05 0.2645 0/18/90 0/7/108 0.01233 2.90 1.19 7.08 1/71/527 2/43/495 0.007005 1.60 1.13 2.26 G 0.244398 1 115/676/1046 104/653/1021 0.6777 1.02 0.92 1.14 0.2135 1.07 0.96 1.18
rs10498989 6 MANEA A 0.43 0.6011 21/48/39 26/66/23 0.03872 0.68 0.47 0.99 94/306/200 107/272/156 0.007023 0.81 0.70 0.94 G 0.335134 0.1952 217/826/793 177/805/791 0.138 1.08 0.98 1.19 0.007111 1.12 1.03 1.22
rs10511154 3 N/A G 0.16 0.1487 2/43/63 1/28/84 0.01237 1.82 1.10 3.00 16/171/413 6/138/390 0.007038 1.33 1.08 1.64 G 0.370745 0.4489 252/837/746 244/850/684 0.3413 0.95 0.87 1.05 0.792 1.01 0.93 1.10
rs9296453 6 SUPT3H G 0.26 0.1584 6/34/67 11/52/52 0.0121 0.58 0.38 0.89 39/209/350 47/201/292 0.007142 0.79 0.66 0.94 A 0.403681 0.4942 299/844/694 299/877/600 0.05087 0.91 0.83 1.00 0.66 0.98 0.90 1.07
rs1758734 9 TUSC1 A 0.43 0.132 31/52/25 21/52/42 0.01455 1.62 1.11 2.35 122/294/182 83/279/178 0.007241 1.23 1.06 1.43 G 0.456269 0.924 359/934/544 382/881/513 0.2415 0.95 0.86 1.04 0.01728 0.91 0.84 0.98
rs6837953 4 KIAA1727 A 0.08 0.5221 1/19/83 0/7/105 0.003096 3.52 1.46 8.46 6/101/492 4/72/464 0.007296 1.46 1.11 1.94 A 0.0913993 0.5521 13/323/1501 11/290/1478 0.2726 1.09 0.93 1.28 0.02268 1.18 1.02 1.35
rs2600306 3 CNTN4 A 0.15 0.2674 4/31/72 1/18/96 0.003791 2.34 1.32 4.16 18/156/425 13/120/406 0.007351 1.34 1.08 1.66 A 0.405402 0.658 298/892/645 287/865/623 0.9715 1.00 0.91 1.10 0.2761 1.05 0.96 1.14
rs4422737 8 NRG1 G 0.49 0.05808 36/23/47 22/25/68 0.009336 1.90 1.28 2.80 137/294/168 127/293/120 0.007359 1.23 1.06 1.43 G 0.401689 0.2766 306/872/655 271/875/632 0.5932 1.03 0.93 1.13 0.3419 0.96 0.89 1.04
rs10494752 1 ZBTB41 G 0.27 0.09028 5/27/76 12/43/60 0.004692 0.50 0.32 0.79 44/214/341 51/203/286 0.007533 0.79 0.67 0.94 A 0.48617 0.04629 428/863/475 440/846/491 0.9118 1.01 0.92 1.10 0.1756 0.95 0.87 1.03
rs2806694 9 INVS G 0.18 0.2769 7/35/66 3/23/89 0.007568 2.03 1.23 3.36 23/184/392 18/142/380 0.007577 1.31 1.07 1.59 G 0.372508 0.2008 261/871/703 224/850/703 0.2122 1.06 0.97 1.17 0.02141 1.11 1.02 1.21
rs1329716 6 SUPT3H G 0.27 0.5981 7/34/67 12/52/51 0.0124 0.58 0.38 0.88 43/217/339 47/215/278 0.007603 0.79 0.67 0.94 A 0.419087 0.5946 318/867/652 322/883/573 0.08377 0.92 0.84 1.01 0.808 1.01 0.93 1.10
rs781354 14 KIAA1344 A 0.24 0.2586 4/48/56 3/32/80 0.01125 1.77 1.11 2.81 48/210/341 31/175/328 0.007648 1.28 1.07 1.53 A 0.371713 0.9181 266/871/697 230/823/726 0.05597 1.10 1.00 1.21 0.003094 1.14 1.04 1.24
rs2286503 7 TOMM7 G 0.36 0.7172 8/52/48 24/48/43 0.02737 0.64 0.43 0.95 75/265/259 82/252/206 0.007717 0.81 0.69 0.95 A 0.397234 0.04725 285/898/653 297/810/672 0.6314 1.02 0.93 1.13 0.07811 1.08 0.99 1.17
rs1321687 1 CLCA4 A 0.14 0.4256 3/19/86 1/41/73 0.03274 0.57 0.33 0.97 6/144/447 16/140/383 0.008166 0.75 0.61 0.93 A 0.494186 0.5062 462/903/471 435/873/468 0.5744 1.03 0.94 1.13 0.6055 0.98 0.90 1.06
rs7554230 1 N/A G 0.41 0.4837 13/55/38 32/52/31 0.01052 0.61 0.42 0.89 95/285/219 105/257/178 0.008362 0.81 0.70 0.95 A 0.392241 0.1669 275/865/661 271/773/635 0.9541 1.00 0.91 1.10 0.1344 1.06 0.98 1.15
rs10520562 4 N/A G 0.10 0.3826 0/13/95 2/31/82 0.001492 0.36 0.18 0.69 3/106/490 9/103/428 0.008784 0.72 0.56 0.92 G 0.0452407 0.4274 2/158/1677 5/155/1617 0.6428 0.95 0.76 1.19 0.03525 0.84 0.71 0.99
rs982677 2 N/A C 0.32 1 17/49/41 9/45/60 0.01449 1.66 1.11 2.48 67/265/268 47/225/263 0.008786 1.24 1.06 1.46 C 0.313071 0.5834 182/774/877 172/779/827 0.6293 0.98 0.88 1.08 0.3408 1.04 0.96 1.13
rs10517988 4 N/A A 0.05 1 2/15/86 0/5/106 0.003044 4.41 1.62 12.04 2/60/537 0/44/496 0.008857 1.61 1.12 2.31 A 0.00554631 1 0/20/1814 0/20/1752 #N/A #N/A #N/A #N/A #N/A #N/A #N/A #N/A
rs179194 5 HSD17B4 A 0.47 0.3445 14/51/43 40/40/35 0.00224 0.53 0.36 0.77 122/299/178 120/281/139 0.009051 0.82 0.70 0.95 A 0.329552 0.7448 197/841/798 188/771/819 0.2173 1.06 0.96 1.17 0.7043 0.98 0.91 1.07

rs1585459 9 SYK G 0.18 0.6424 7/42/59 5/28/82 0.0179 1.77 1.11 2.81 19/195/383 13/154/372 0.009158 1.29 1.07 1.57 G 0.00207584 1 1/10/1826 0/3/1773 #N/A #N/A #N/A #N/A #N/A #N/A #N/A #N/A
rs2175379 9 ADFP A 0.43 0.5428 13/53/42 28/62/25 0.001353 0.55 0.37 0.80 104/294/201 105/275/160 0.009607 0.82 0.70 0.95 A 0.262254 0.0504 127/703/1005 140/657/979 0.7611 0.98 0.89 1.09 0.08655 0.93 0.85 1.01
rs10511750 9 TUSC1 A 0.30 0.6699 22/35/51 9/37/68 0.01001 1.81 1.20 2.74 56/260/283 40/223/277 0.009656 1.24 1.05 1.47 A 0.447871 0.7733 376/913/548 345/884/550 0.3453 1.05 0.95 1.15 0.038 1.09 1.01 1.18
rs1554027 3 N/A G 0.16 0.2158 2/43/63 1/28/86 0.009696 1.85 1.12 3.06 16/170/414 7/138/390 0.009769 1.31 1.07 1.62 G 0.370981 0.4793 247/822/729 244/850/685 0.3823 0.96 0.87 1.06 0.7722 1.01 0.93 1.11
rs9308990 2 CRIM1 G 0.27 0.246 4/39/65 16/48/51 0.002851 0.52 0.34 0.80 37/236/326 50/209/281 0.009779 0.80 0.68 0.95 G 0.134765 0.6246 35/401/1397 38/426/1313 0.1166 0.90 0.78 1.03 0.004298 0.86 0.77 0.95
rs10498315 14 NPAS3 G 0.47 0.9312 20/52/36 34/54/27 0.03101 0.66 0.45 0.95 116/304/178 127/266/141 0.009839 0.82 0.70 0.95 G 0.283896 0.3787 145/763/929 148/703/926 0.5874 1.03 0.93 1.14 0.3094 0.96 0.88 1.04
rs2296554 9 FRMPD1 G 0.05 0.2681 0/18/90 0/7/108 0.01233 2.90 1.19 7.08 0/72/527 2/43/490 0.009947 1.57 1.11 2.22 G 0.243636 0.897 114/676/1047 102/653/1022 0.6449 1.03 0.92 1.14 0.2119 1.07 0.96 1.18
rs1605057 4 ANP32C G 0.36 0.3365 14/60/34 11/47/57 0.01479 1.60 1.09 2.37 83/288/229 68/230/236 0.01015 1.23 1.05 1.44 A 0.258176 0.4634 118/692/1023 129/677/969 0.3224 0.95 0.85 1.05 0.02391 0.90 0.83 0.99
rs983078 9 TUSC1 C 0.35 0.3341 17/62/29 12/45/58 0.001351 1.87 1.27 2.76 80/274/245 55/251/234 0.01019 1.23 1.05 1.44 C 0.465541 0.6327 416/907/513 366/893/518 0.1589 1.07 0.97 1.17 0.01233 1.11 1.02 1.20
rs4673372 2 CREB1 A 0.24 1 10/49/48 4/38/72 0.003466 1.88 1.22 2.90 34/237/324 28/190/319 0.01033 1.26 1.06 1.50 A 0.347453 0.5296 227/828/780 218/792/767 0.7304 1.02 0.92 1.12 0.1242 1.07 0.98 1.16
rs1356612 3 DLG1 A 0.24 0.6512 2/34/71 10/51/54 0.001102 0.48 0.31 0.76 34/207/356 37/201/301 0.01046 0.80 0.67 0.95 A 0.238649 0.8414 104/694/1036 93/636/1049 0.1489 1.08 0.97 1.21 0.9273 1.00 0.91 1.09
rs9309530 2 N/A A 0.32 1 18/48/42 9/47/59 0.01985 1.62 1.09 2.40 66/265/267 47/225/263 0.01072 1.24 1.05 1.45 A 0.314938 0.4435 189/773/874 171/784/824 0.7929 0.99 0.89 1.09 0.2715 1.05 0.96 1.14
rs10493669 1 N/A A 0.15 0.8738 0/25/82 8/28/79 0.03819 0.56 0.33 0.95 11/138/450 13/147/379 0.01091 0.76 0.61 0.94 A 0.06934 0.4706 11/223/1581 11/231/1534 0.5263 0.94 0.79 1.13 0.03309 0.86 0.75 0.99
rs964331 8 ADAMDEC1 A 0.34 0.201 28/38/42 10/53/52 0.01562 1.66 1.13 2.44 76/274/249 63/223/254 0.01094 1.23 1.05 1.44 A 0.129148 0.4232 26/393/1418 29/431/1319 0.03821 0.86 0.75 0.99 0.9133 1.01 0.91 1.12
rs840970 2 FLJ16124 A 0.30 0.3949 11/46/51 10/32/73 0.04511 1.57 1.03 2.40 60/263/276 47/209/278 0.01102 1.24 1.05 1.46 A 0.387275 0.8817 269/859/708 278/847/654 0.2174 0.94 0.86 1.04 0.8298 1.01 0.93 1.10
rs4800876 18 CDH2 A 0.26 0.2312 2/34/72 8/46/61 0.01606 0.58 0.37 0.91 48/194/358 34/225/276 0.01122 0.80 0.67 0.95 A 0.271733 0.7182 139/726/969 126/707/945 0.7123 1.02 0.92 1.13 0.3324 0.96 0.88 1.05
rs973968 14 FLJ43390 G 0.14 0.3235 1/36/71 1/20/94 0.009699 2.02 1.15 3.54 13/153/433 11/113/415 0.01154 1.33 1.07 1.66 G 0.1928 0.818 70/570/1192 63/551/1151 0.8087 1.02 0.90 1.14 0.1668 1.08 0.97 1.19
rs1539682 9 MLLT3 A 0.48 0.931 38/45/25 21/53/41 0.003325 1.81 1.24 2.64 148/290/161 115/267/158 0.01168 1.21 1.04 1.41 C 0.140742 0.553 44/434/1357 31/433/1314 0.7175 1.03 0.90 1.17 0.1648 0.93 0.84 1.03
rs10499856 7 CD36 G 0.04 0.02698 01/10/96 0/3/112 0.01695 4.50 1.25 16.16 4/53/542 3/33/504 0.01192 1.63 1.11 2.40 G 0.000692137 1 0/3/1833 0/2/1774 #N/A #N/A #N/A #N/A #N/A #N/A #N/A #N/A
rs797910 1 GLIS1 G 0.15 0.8554 6/36/66 4/20/91 0.007472 2.06 1.24 3.43 10/170/419 9/130/401 0.01226 1.31 1.06 1.62 G 0.044175 0.0007976 14/127/1681 11/140/1615 0.4953 0.92 0.74 1.16 0.1718 1.11 0.95 1.30
rs400477 6 FNDC1 C 0.26 0.7474 9/34/65 22/39/54 0.01264 0.56 0.37 0.85 42/215/341 43/213/283 0.01239 0.81 0.68 0.95 C 0.0939142 0.6791 17/308/1512 14/309/1455 0.8123 0.98 0.84 1.15 0.05953 0.89 0.80 1.01
rs2273061 20 JAG1 G 0.28 0.8267 11/52/33 6/46/60 0.003819 1.80 1.18 2.72 49/258/292 40/210/290 0.01245 1.24 1.05 1.46 A 0.42956 0.9236 317/888/631 353/876/548 0.008316 0.88 0.80 0.97 0.0004397 1.16 1.07 1.26
rs1158279 9 C9orf82 G 0.01 1 0/0/107 0/9/106 0.003134 0.00 0.00 nan 0/12/587 0/17/523 0.01306 0.42 0.21 0.85 G 0.0243632 1 2/91/1744 0/81/1694 0.3979 1.14 0.84 1.54 0.7715 0.96 0.73 1.26
rs6663269 1 PLXNA2 C 0.29 0.4465 16/51/41 8/50/57 0.02802 1.55 1.04 2.30 46/275/279 36/220/279 0.01321 1.23 1.04 1.45 C 0.0457815 0.1773 4/159/1674 1/162/1615 0.9062 0.99 0.79 1.23 0.05689 1.14 1.00 1.30
rs2867469 19 ZNF536 G 0.31 0.3802 7/48/53 16/62/37 0.004896 0.58 0.39 0.86 61/237/301 63/229/248 0.01342 0.82 0.69 0.96 G 0.331903 0.8314 201/805/829 197/796/783 0.5741 0.97 0.88 1.07 0.07894 0.93 0.85 1.01
rs9323804 14 FLRT2 A 0.33 0.633 11/41/56 19/53/43 0.02549 0.63 0.42 0.93 63/245/291 66/238/236 0.01342 0.82 0.70 0.96 A 0.431416 0.3611 316/920/601 355/858/566 0.1131 0.93 0.85 1.02 0.009365 0.90 0.83 0.97
rs1741949 3 DLG1 G 0.27 0.9155 4/35/69 10/53/52 0.003936 0.53 0.35 0.83 38/229/332 42/220/278 0.01354 0.81 0.68 0.96 G 0.370227 1 245/901/690 232/821/725 0.1307 1.08 0.98 1.18 0.8961 1.01 0.93 1.09
rs167345 5 MEF2C G 0.31 0.7695 14/32/62 17/56/42 0.01637 0.60 0.40 0.89 53/252/295 56/239/239 0.01385 0.82 0.69 0.96 G 0.296758 0.4675 142/772/918 159/768/850 0.1125 0.92 0.83 1.02 0.007544 0.89 0.82 0.97
rs207098 6 N/A A 0.21 0.8915 8/44/56 3/29/83 0.001373 2.14 1.34 3.42 33/193/372 21/169/350 0.01386 1.26 1.05 1.52 A 0.0868603 0.4772 9/284/1544 12/302/1464 0.1605 0.89 0.75 1.05 0.5778 1.04 0.92 1.17
rs7863451 9 GARNL3 A 0.09 0.04698 2/13/93 1/31/83 0.03098 0.51 0.28 0.95 3/87/510 1/102/432 0.01414 0.72 0.55 0.94 A 0.383679 0.1087 266/876/695 246/874/658 0.9209 1.00 0.91 1.09 0.3631 0.96 0.88 1.05

rs965123 8 N/A A 0.17 0.1873 5/39/64 3/21/91 0.002692 2.21 1.32 3.68 17/176/406 17/133/389 0.01441 1.29 1.05 1.58 A 0.348795 0.006851 237/845/752 177/846/754 0.05224 1.10 1.00 1.21 0.004772 1.13 1.04 1.24
rs10513854 3 IL1RAP A 0.06 1 2/16/89 0/9/106 0.02574 2.53 1.13 5.69 2/75/522 1/52/487 0.01447 1.50 1.08 2.07 A 0.123997 0.7405 34/393/1409 28/379/1370 0.6822 1.03 0.90 1.18 0.1749 1.09 0.96 1.24
rs1275643 12 N/A A 0.28 0.8376 7/29/72 9/50/56 0.02156 0.59 0.38 0.92 44/233/321 47/229/263 0.01465 0.81 0.69 0.96 A 0.449045 0.2702 380/882/574 349/903/523 0.7532 0.99 0.90 1.08 0.143 0.94 0.87 1.02
rs207097 6 N/A A 0.21 0.8916 8/44/56 3/29/83 0.001373 2.14 1.34 3.42 33/193/372 21/169/349 0.01466 1.26 1.05 1.52 A 0.0864317 0.5644 9/283/1541 12/298/1461 0.1939 0.90 0.76 1.06 0.5329 1.04 0.92 1.18
rs571770 6 N/A C 0.47 0.1025 18/50/40 31/55/29 0.02227 0.64 0.44 0.93 128/292/179 140/251/149 0.01466 0.83 0.71 0.96 C 0.292717 0.8192 153/763/919 156/733/887 0.7867 0.99 0.89 1.09 0.1121 0.93 0.86 1.02
rs3820689 1 RGL1 G 0.28 0.6818 6/40/61 14/52/49 0.01617 0.60 0.40 0.91 44/235/319 46/232/262 0.01514 0.81 0.69 0.96 G 0.468318 0.8115 400/937/500 379/890/508 0.4413 1.04 0.95 1.14 0.6148 0.98 0.90 1.06
rs4053639 6 ACY1L2 G 0.23 0.899 8/50/50 2/39/74 0.002383 1.91 1.23 2.97 28/232/339 26/182/332 0.01524 1.25 1.04 1.49 G 0.271381 0.7167 140/729/968 124/704/948 0.5229 1.03 0.93 1.15 0.07724 1.08 0.99 1.19
rs10492206 12 DYRK2 G 0.37 0.1873 23/53/32 13/51/51 0.008375 1.68 1.15 2.47 74/311/214 60/262/218 0.01564 1.21 1.04 1.42 A 0.343577 0.6746 208/840/787 207/812/758 0.8091 0.99 0.90 1.09 0.1368 0.94 0.87 1.02
rs10520565 15 CPEB1 A 0.21 0.2783 6/38/61 1/33/81 0.02026 1.74 1.08 2.81 38/197/365 25/162/346 0.01567 1.26 1.04 1.51 A 0.136037 1 32/424/1380 34/427/1316 0.4501 0.95 0.83 1.09 0.4349 1.04 0.94 1.16
rs17622017 1 N/A A 0.03 1 0/13/95 0/1/112 0.0006686 14.41 1.87 111.10 0/38/561 0/26/514 0.01575 1.77 1.10 2.83 A 0.106886 0.8089 21/341/1475 20/350/1409 0.47 0.95 0.82 1.10 0.9538 1.00 0.87 1.16
rs633082 9 N/A G 0.31 0.5544 7/46/55 14/57/44 0.03361 0.66 0.44 0.98 44/262/294 53/241/240 0.01594 0.82 0.70 0.96 G 0.287216 0.9092 143/743/951 153/741/883 0.1649 0.93 0.84 1.03 0.0149 0.90 0.82 0.98
rs2597881 4 C4orf32 A 0.37 1 19/49/40 10/47/58 0.01564 1.64 1.11 2.43 94/269/237 65/244/226 0.01607 1.21 1.04 1.42 A 0.351467 0.4989 227/836/772 226/797/754 0.9992 1.00 0.91 1.10 0.2046 1.06 0.97 1.15
rs7564654 2 ITGA6 G 0.48 0.388 31/50/27 18/56/41 0.01392 1.62 1.11 2.35 136/321/141 111/279/150 0.01611 1.20 1.04 1.40 A 0.257819 0.7574 118/706/1012 122/677/978 0.8052 0.99 0.89 1.10 0.1123 0.93 0.86 1.02
rs303212 10 IFIT1 A 0.34 0.1944 17/43/48 5/49/61 0.02373 1.61 1.07 2.41 76/268/255 47/246/241 0.01646 1.22 1.04 1.43 G 0.255325 0.04535 101/740/996 131/642/1005 0.8311 1.01 0.91 1.12 0.2528 0.95 0.87 1.04
rs1073230 13 KATNAL1 A 0.36 0.7118 9/54/45 18/64/33 0.01926 0.65 0.44 0.96 63/282/255 72/255/208 0.01668 0.83 0.71 0.97 A 0.381375 0.02891 273/886/674 267/786/722 0.1021 1.08 0.98 1.19 0.8692 1.01 0.93 1.09
rs646103 2 EHD3 A 0.01 0.1817 0/0/108 0/5/110 0.0284 0.00 0.00 nan 0/13/587 1/19/514 0.01668 0.45 0.23 0.88 A 0.163827 0.5863 44/538/1250 46/455/1247 0.09978 1.11 0.98 1.26 0.2508 1.08 0.95 1.22
rs10515787 5 EBF1 A 0.26 1 2/43/63 9/57/49 0.005936 0.57 0.38 0.88 43/215/342 41/215/278 0.01671 0.81 0.68 0.96 A 0.030324 1 0/95/1742 2/120/1652 0.02352 0.73 0.56 0.96 0.00125 0.79 0.68 0.91
rs7564171 2 NRP2 A 0.14 1 4/32/72 0/22/93 0.006008 2.15 1.23 3.75 15/145/439 8/120/412 0.01687 1.31 1.05 1.63 A 0.209499 0.5089 84/626/1127 68/583/1123 0.1601 1.09 0.97 1.22 0.0189 1.13 1.02 1.25
rs4724522 7 N/A C 0.39 0.8541 27/47/32 13/54/45 0.01351 1.64 1.12 2.40 106/279/215 78/249/208 0.01706 1.21 1.03 1.41 C 0.177683 0.6225 61/541/1235 51/520/1208 0.5262 1.04 0.92 1.17 0.04953 1.10 1.00 1.21
rs10502366 18 PTPRM A 0.21 0.108 6/30/72 9/50/56 0.01484 0.58 0.37 0.89 22/197/381 34/174/327 0.01721 0.80 0.67 0.96 A 0.400581 0.06132 296/867/674 271/896/612 0.5365 0.97 0.88 1.07 0.102 0.93 0.86 1.01
rs1536817 6 RP3-402H5.2 C 0.19 0.2274 6/22/80 6/42/67 0.04977 0.61 0.38 0.98 16/176/408 26/163/346 0.01722 0.79 0.65 0.96 C 0.342877 0.2031 222/834/780 215/771/793 0.3588 1.05 0.95 1.15 0.8154 0.99 0.91 1.08
rs1077644 19 ZNF536 A 0.26 1 4/44/58 14/57/44 0.003452 0.55 0.37 0.84 44/215/339 41/218/281 0.0173 0.81 0.69 0.96 A 0.0715276 0.854 8/253/1573 9/229/1535 0.5287 1.06 0.89 1.27 0.1889 0.92 0.81 1.04
rs725901 18 CDH19 A 0.14 0.6132 0/24/84 4/37/74 0.01154 0.51 0.30 0.88 7/141/451 14/135/391 0.01736 0.77 0.62 0.96 A 0.148174 0.6994 46/469/1321 34/442/1302 0.2605 1.08 0.95 1.23 0.7877 0.98 0.88 1.10
rs304161 5 MEF2C G 0.31 1 13/35/60 17/55/42 0.02155 0.61 0.41 0.92 55/247/297 57/236/241 0.01738 0.82 0.70 0.97 G 0.298782 0.6163 148/771/917 163/766/848 0.127 0.92 0.84 1.02 0.01014 0.89 0.82 0.97
rs1481187 4 N/A A 0.20 1 8/38/62 2/31/82 0.01097 1.86 1.16 2.98 23/212/364 19/168/353 0.01768 1.26 1.04 1.51 A 0.178384 0.004974 63/545/1228 37/544/1196 0.3351 1.06 0.94 1.20 0.03482 1.12 1.01 1.23
rs10507198 12 NUAK1 A 0.26 0.5623 10/50/47 2/52/61 0.03625 1.51 1.00 2.29 36/260/302 35/195/309 0.01775 1.23 1.04 1.46 A 0.322983 0.6602 197/816/821 181/758/834 0.1999 1.07 0.97 1.18 0.02196 1.11 1.02 1.20
rs10502353 18 LAMA1 C 0.25 0.7169 5/53/45 6/29/78 0.002065 1.99 1.27 3.12 28/252/320 27/196/312 0.01792 1.24 1.04 1.47 C 0.321162 0.8269 206/781/850 177/775/826 0.5123 1.03 0.94 1.14 0.08299 1.08 0.99 1.18
rs4395341 22 N/A G 0.04 0.3874 0/4/104 1/15/99 0.007084 0.24 0.08 0.71 2/43/554 0/55/485 0.01796 0.64 0.45 0.93 G 0.0381743 1 2/133/1702 2/135/1641 0.6841 0.95 0.75 1.21 0.1005 0.85 0.69 1.03
rs2597883 4 C4orf32 G 0.37 0.8504 19/50/39 9/48/58 0.008363 1.71 1.15 2.53 93/269/236 68/244/228 0.01805 1.21 1.03 1.41 G 0.354415 0.5694 230/837/767 230/804/745 0.8761 0.99 0.90 1.09 0.2646 1.05 0.97 1.14
rs10487775 7 N/A A 0.41 0.7865 29/47/32 15/53/47 0.01002 1.68 1.15 2.45 111/280/208 84/254/202 0.01915 1.20 1.03 1.40 A 0.281977 0.6403 143/744/950 147/713/915 0.7533 0.98 0.89 1.09 0.2964 1.05 0.96 1.14

rs2540718 16 IRX6 G 0.25 0.8138 8/55/45 6/35/74 0.002428 1.91 1.24 2.93 44/226/329 32/195/313 0.01944 1.23 1.03 1.46 G 0.349072 0.1609 223/823/789 207/838/731 0.5436 0.97 0.88 1.07 0.5346 1.03 0.94 1.12
rs1013732 12 N/A A 0.32 0.2071 12/29/67 15/48/52 0.04438 0.63 0.42 0.96 56/253/291 67/225/243 0.01975 0.82 0.70 0.97 G 0.409607 0.0141 313/879/644 272/910/594 0.9633 1.00 0.91 1.10 0.2281 1.05 0.97 1.14
rs188872 16 CCL17 A 0.30 0.9199 7/29/70 17/43/55 0.004063 0.51 0.33 0.78 51/242/306 51/233/256 0.01981 0.82 0.70 0.97 A 0.247093 0.6205 103/662/1070 114/689/974 0.03608 0.89 0.80 0.99 0.00233 0.87 0.80 0.95
rs727200 7 MAGI2 A 0.13 0.1384 4/25/79 0/20/93 0.04097 1.86 1.03 3.35 15/138/447 11/103/421 0.01986 1.31 1.04 1.65 A 0.237542 0.09506 91/712/1032 82/658/1037 0.2262 1.07 0.96 1.19 0.0344 1.11 1.01 1.23
rs7777070 7 NXPH1 A 0.46 0.5993 31/54/23 22/55/38 0.02587 1.54 1.06 2.23 129/308/163 100/270/165 0.01987 1.20 1.03 1.39 G 0.287119 0.1503 154/732/949 163/707/905 0.48 0.96 0.87 1.07 0.05812 0.92 0.85 1.00
rs1033363 8 TG G 0.22 0.5935 8/44/56 3/36/76 0.01587 1.72 1.10 2.69 36/200/363 24/170/346 0.02053 1.24 1.03 1.49 G 0.317691 1 184/792/859 181/773/823 0.7482 0.98 0.89 1.09 0.3992 1.04 0.95 1.13
rs78506 22 TIMP3 A 0.26 0.5162 5/35/68 8/57/50 0.007111 0.57 0.37 0.87 37/224/338 37/222/281 0.02056 0.82 0.69 0.97 A 0.448405 0.3871 365/918/550 345/895/532 0.8601 1.01 0.92 1.11 0.3514 0.96 0.89 1.04
rs7654933 4 N/A A 0.21 0.7822 8/38/62 2/31/82 0.01097 1.86 1.16 2.98 23/213/363 21/166/353 0.02075 1.25 1.03 1.50 A 0.178245 0.006204 63/545/1228 37/543/1197 0.3191 1.06 0.94 1.20 0.0352 1.12 1.01 1.23
rs10485819 20 RP5-1103G7.6 C 0.31 0.8442 7/36/65 15/46/54 0.0265 0.61 0.40 0.93 56/241/302 58/234/248 0.02078 0.82 0.70 0.97 C 0.102656 0.1711 13/374/1450 11/320/1446 0.07917 1.15 0.98 1.34 0.7813 0.98 0.88 1.10
rs8053158 16 FOXL1 A 0.21 0.5843 8/39/61 5/27/83 0.0195 1.78 1.12 2.84 24/218/357 23/165/347 0.0208 1.25 1.03 1.50 A 0.143352 0.9235 42/438/1355 36/441/1298 0.8001 0.98 0.86 1.12 0.2646 1.06 0.95 1.18
rs10497744 2 TMEFF2 A 0.35 0.226 10/47/51 21/61/33 0.002432 0.55 0.38 0.82 70/265/262 78/236/226 0.02086 0.83 0.71 0.97 A 0.301328 0.9124 146/770/921 174/768/835 0.02124 0.89 0.80 0.98 0.001413 0.87 0.80 0.95
rs4132242 8 SNX16 A 0.06 0.1691 0/18/90 0/5/110 0.002505 4.09 1.49 11.22 4/70/525 3/50/481 0.02101 1.47 1.06 2.04 A 0.14821 0.5747 36/469/1329 42/443/1284 0.8482 0.99 0.87 1.12 0.4838 1.04 0.93 1.18
rs6997287 8 CPA6 G 0.16 0.484 3/42/63 4/23/88 0.01564 1.83 1.12 3.01 17/164/416 13/128/393 0.02103 1.28 1.04 1.57 G 0.0680055 0.4445 4/245/1586 10/218/1547 0.7335 1.03 0.86 1.24 0.0764 1.13 0.99 1.30
rs767278 3 MAGI1 C 0.19 0.1735 6/30/72 1/25/89 0.02872 1.82 1.07 3.07 21/197/381 21/144/370 0.0214 1.26 1.03 1.53 C 0.109574 0.8046 23/366/1448 21/338/1418 0.471 1.06 0.91 1.22 0.05073 1.13 1.00 1.27
rs4815252 20 GGTLA4 A 0.24 0.7342 6/33/69 14/45/56 0.0129 0.57 0.37 0.87 30/217/351 37/202/301 0.02192 0.82 0.68 0.97 A 0.130995 1 22/413/1401 33/422/1316 0.09533 0.89 0.78 1.02 0.006275 0.86 0.77 0.96
rs9303532 17 RPRML G 0.31 0.3012 11/57/40 12/38/65 0.03023 1.56 1.05 2.34 60/273/266 42/235/258 0.02222 1.21 1.03 1.42 G 0.417266 0.8072 325/886/626 311/858/608 0.8857 1.01 0.92 1.11 0.2061 1.05 0.97 1.14
rs10493374 1 DNAJC6 A 0.27 0.8212 8/55/45 4/45/66 0.01376 1.64 1.08 2.48 50/242/307 34/208/293 0.02228 1.22 1.03 1.44 A 0.0960155 0.6965 10/312/1514 20/322/1436 0.1057 0.88 0.75 1.03 0.7279 1.02 0.91 1.15
rs1550977 1 N/A G 0.22 0.4345 6/39/63 2/27/86 0.006108 1.98 1.21 3.24 36/206/357 20/186/334 0.02362 1.24 1.03 1.49 G 0.370227 0.7594 248/875/713 236/833/709 0.5864 1.03 0.93 1.13 0.1224 1.07 0.98 1.16
rs2148620 1 RGL1 A 0.28 0.4716 6/41/61 14/52/49 0.0183 0.61 0.40 0.92 44/237/318 44/234/262 0.02365 0.83 0.70 0.97 A 0.468023 0.7385 398/937/500 378/892/507 0.4708 1.04 0.94 1.14 0.6409 0.98 0.90 1.06
rs4087609 1 RGL1 A 0.28 0.4716 6/41/61 14/52/49 0.0183 0.61 0.40 0.92 44/237/318 44/234/262 0.02365 0.83 0.70 0.97 A 0.468188 0.7029 399/938/500 378/893/507 0.456 1.04 0.94 1.14 0.6565 0.98 0.91 1.06
rs10489487 1 N/A G 0.10 0.005915 1/24/82 1/11/103 0.01651 2.31 1.15 4.62 19/91/487 10/76/448 0.0237 1.34 1.04 1.74 G 0.0537247 0.014 7/169/1658 12/181/1584 0.1433 0.86 0.70 1.05 0.7838 1.02 0.87 1.20
rs4132243 8 LOC138046 A 0.06 0.1921 1/17/90 0/5/110 0.002286 4.34 1.59 11.84 4/70/525 3/52/485 0.02383 1.45 1.05 2.01 A 0.148907 0.7103 36/470/1329 42/450/1286 0.7525 0.98 0.86 1.12 0.5661 1.04 0.92 1.17
rs4130169 12 OCC-1 A 0.31 0.8436 3/42/63 14/60/41 0.0001274 0.46 0.30 0.70 52/259/288 56/233/251 0.02406 0.83 0.71 0.98 A 0.28611 0.3514 153/750/932 152/708/919 0.7632 1.02 0.92 1.13 0.3494 0.96 0.88 1.05
rs10485818 20 RP5-1103G7.6 C 0.31 0.8442 7/36/61 15/46/53 0.04004 0.63 0.42 0.96 56/240/302 58/234/248 0.02421 0.83 0.70 0.98 C 0.102795 0.1716 13/374/1448 11/321/1447 0.08059 1.15 0.98 1.33 0.809 0.99 0.88 1.10
rs4128269 8 LOC138046 A 0.06 0.1921 0/18/90 0/5/110 0.002505 4.09 1.49 11.22 5/69/525 3/52/485 0.02424 1.45 1.05 2.01 A 0.14762 0.5765 34/466/1337 43/447/1287 0.5676 0.96 0.85 1.10 0.7375 1.02 0.91 1.15
rs10245298 7 N/A A 0.07 0.4525 1/19/88 0/10/105 0.02533 2.37 1.09 5.16 3/88/509 3/61/471 0.02576 1.40 1.04 1.89 A 0.0903431 0.7582 22/312/1502 11/275/1492 0.04361 1.18 1.01 1.39 0.004845 1.23 1.06 1.41
rs8124344 20 RP5-1103G7.6 A 0.31 0.8435 7/36/65 15/46/54 0.0265 0.61 0.40 0.93 57/239/301 57/232/246 0.02582 0.83 0.70 0.98 A 0.102823 0.1717 13/374/1450 11/321/1444 0.08791 1.14 0.98 1.33 0.801 0.99 0.88 1.10
rs10492208 12 DYRK2 A 0.06 0.6278 1/15/92 0/7/108 0.0262 2.72 1.11 6.70 1/73/524 0/52/482 0.0259 1.46 1.04 2.04 A 0.28759 0.7612 159/743/887 132/668/876 0.09441 1.09 0.98 1.21 0.02187 1.12 1.02 1.24
rs6879479 5 GRAMD3 G 0.26 0.1027 6/33/69 13/47/55 0.01197 0.57 0.37 0.87 34/230/335 32/230/278 0.026 0.82 0.69 0.98 G 0.148035 0.7759 36/479/1320 36/447/1296 0.6219 1.03 0.91 1.18 0.3482 0.95 0.86 1.06
rs1489092 3 N/A G 0.42 0.2806 24/54/30 17/52/46 0.03798 1.50 1.03 2.19 116/284/200 79/269/187 0.02662 1.19 1.02 1.39 A 0.370745 0.03798 263/821/753 229/874/673 0.4599 0.96 0.88 1.06 0.07193 0.93 0.86 1.01

rs9317543 13 PCDH9 A 0.50 0.2291 19/46/43 37/54/24 0.0007343 0.51 0.35 0.74 154/299/146 136/256/148 0.02726 0.84 0.73 0.98 G 0.479674 0.1065 423/910/504 395/923/461 0.7825 0.99 0.90 1.08 0.159 0.95 0.87 1.02
rs10514100 18 FBXO15 C 0.13 0.1514 3/32/73 2/13/97 0.002115 2.60 1.42 4.77 7/145/447 11/106/423 0.0273 1.29 1.03 1.62 C 0.0728155 0.09553 9/231/1595 16/244/1510 0.1001 0.86 0.72 1.03 0.9525 1.00 0.87 1.16
rs2397445 16 MMP2 G 0.12 0.0008064 28/62/18 20/52/43 0.001723 1.81 1.24 2.63 0/143/456 0/121/419 0.02741 1.27 1.03 1.57 A 0.402712 0.1379 312/869/654 267/883/628 0.4761 1.04 0.94 1.14 0.8125 1.01 0.93 1.10
rs7191095 16 MAF A 0.26 0.3558 7/56/42 7/35/73 0.003635 1.85 1.21 2.83 49/225/325 37/192/306 0.02806 1.21 1.02 1.44 A 0.154676 0.7095 46/493/1297 42/449/1287 0.2559 1.08 0.95 1.22 0.02786 1.12 1.01 1.24
rs170533 1 N/A A 0.50 0.0158 35/45/28 22/48/45 0.009325 1.71 1.17 2.49 144/294/161 126/299/115 0.02822 1.18 1.02 1.38 C 0.404538 0.4308 307/874/655 298/840/640 0.9009 1.01 0.92 1.11 0.2057 1.05 0.97 1.14
rs302640 6 KIF6 A 0.46 0.137 24/62/22 18/58/39 0.026 1.50 1.03 2.18 141/284/174 113/247/175 0.02858 1.18 1.02 1.38 G 0.0416436 0.1201 4/146/1685 6/135/1638 0.8764 1.02 0.81 1.28 0.07909 0.89 0.79 1.01
rs1020941 2 TMEFF2 C 0.35 0.193 11/46/51 21/61/33 0.003627 0.57 0.38 0.83 71/267/261 78/235/225 0.02883 0.84 0.72 0.98 C 0.302271 0.8257 147/773/917 173/770/831 0.02609 0.89 0.81 0.99 0.002231 0.88 0.81 0.95
rs7591386 2 CRIM1 A 0.13 0.7289 2/22/84 5/35/75 0.03365 0.56 0.33 0.95 13/124/463 12/131/392 0.02903 0.78 0.63 0.98 A 0.0167544 0.3052 0/70/1765 1/49/1726 0.1169 1.34 0.93 1.92 0.2907 0.90 0.75 1.09
rs4132241 8 SNX16 A 0.06 0.1921 0/18/89 0/5/109 0.00248 4.10 1.49 11.24 4/70/525 3/52/485 0.02904 1.43 1.04 1.99 A 0.148907 0.7096 36/471/1329 42/449/1286 0.7894 0.98 0.86 1.12 0.5581 1.04 0.92 1.17
rs725848 7 N/A G 0.17 0.2644 6/37/65 1/26/88 0.00351 2.12 1.27 3.52 16/179/404 17/138/385 0.0293 1.25 1.02 1.53 G 0.306969 0.1322 172/787/878 153/783/843 0.8696 1.01 0.91 1.11 0.2638 1.05 0.96 1.15
rs10488978 4 FAM44A C 0.36 0.6349 16/52/40 4/50/61 0.001451 1.89 1.26 2.83 87/267/245 62/251/227 0.02946 1.19 1.02 1.40 C 0.242739 0.5594 111/678/1048 98/659/1021 0.6406 1.03 0.92 1.14 0.11 1.08 0.98 1.18
rs6079756 20 C20orf133 G 0.16 0.3069 5/34/68 2/26/87 0.03611 1.73 1.04 2.87 16/174/410 15/130/390 0.02966 1.26 1.02 1.54 G 0.361787 0.4732 231/859/747 228/838/711 0.6792 0.98 0.89 1.08 0.5752 1.03 0.94 1.12
rs1585933 15 ADAMTS17 A 0.49 0.7286 34/50/24 23/55/37 0.02784 1.54 1.06 2.23 156/291/153 122/262/150 0.03035 1.18 1.02 1.37 G 0.228706 0.3797 101/645/1091 98/611/1070 0.6888 1.02 0.92 1.14 0.332 0.96 0.88 1.05
rs1379326 8 N/A G 0.32 0.9226 8/42/58 17/51/47 0.02524 0.63 0.42 0.94 52/260/287 58/240/241 0.03052 0.84 0.71 0.98 G 0.331487 1 206/854/775 179/770/827 0.01477 1.13 1.02 1.25 0.3212 1.04 0.96 1.13
rs10516210 4 MIST A 0.18 1 6/44/58 4/31/80 0.02057 1.71 1.08 2.71 20/185/395 15/148/371 0.03061 1.24 1.02 1.51 A 0.00415053 1 0/9/1828 0/21/1756 #N/A #N/A #N/A #N/A #N/A #N/A #N/A #N/A
rs347311 1 NOS1AP C 0.09 0.3266 1/6/101 4/15/96 0.02051 0.35 0.15 0.79 4/90/505 7/91/442 0.03082 0.74 0.57 0.97 C 0.238829 0.0533 97/664/1070 90/683/999 0.378 0.95 0.85 1.06 0.09724 0.92 0.83 1.02
rs693932 6 SRrp35 C 0.23 0.9015 8/50/49 2/39/74 0.001926 1.94 1.25 3.01 28/234/337 26/190/324 0.03221 1.21 1.02 1.45 C 0.271116 0.6286 140/727/968 123/705/948 0.5205 1.04 0.93 1.15 0.103 1.08 0.99 1.18
rs2146609 1 RGS13 A 0.08 1 2/20/83 0/10/102 0.008229 2.76 1.29 5.93 6/89/504 2/73/465 0.03244 1.36 1.03 1.81 A 0.042197 0.1671 3/139/1693 6/148/1625 0.2589 0.88 0.70 1.10 0.6456 1.04 0.87 1.25
rs4461087 16 DYNLRB2 A 0.38 0.2637 19/60/29 10/58/47 0.008825 1.62 1.10 2.37 81/307/211 78/236/221 0.03293 1.18 1.01 1.38 A 0.159462 0.0009531 49/526/1259 22/483/1270 0.0113 1.18 1.04 1.34 0.0009807 1.18 1.07 1.30
rs1489091 3 N/A A 0.42 0.325 24/54/30 17/52/46 0.03798 1.50 1.03 2.19 116/283/200 81/271/188 0.03308 1.18 1.01 1.38 G 0.370709 0.04279 263/821/752 229/873/674 0.4864 0.97 0.88 1.06 0.08555 0.93 0.86 1.01
rs254315 16 CDH13 G 0.16 0.8801 2/25/79 7/39/69 0.01317 0.53 0.32 0.87 8/169/421 15/155/365 0.03337 0.80 0.66 0.98 G 0.126556 7.412E-10 1/460/1375 4/445/1330 #N/A #N/A #N/A #N/A #N/A #N/A #N/A #N/A
rs2350786 7 CHRM2 G 0.42 0.6558 27/54/27 16/55/44 0.009837 1.64 1.13 2.40 116/283/200 86/266/188 0.03345 1.18 1.01 1.37 A 0.295046 0.5696 158/763/915 161/731/885 0.8325 0.99 0.89 1.09 0.1719 0.94 0.87 1.03
rs4142923 16 N/A G 0.37 0.3605 12/44/52 25/60/30 0.0005113 0.50 0.34 0.74 86/263/249 72/265/203 0.03426 0.85 0.72 0.99 G 0.38895 0.1254 273/846/716 267/883/626 0.08918 0.92 0.84 1.01 0.01038 0.90 0.83 0.98
rs6785504 3 N/A C 0.44 0.428 27/57/24 17/52/46 0.003059 1.77 1.21 2.58 131/275/193 103/254/181 0.03441 1.18 1.01 1.37 A 0.495436 0.2964 453/954/430 428/866/484 0.06225 1.09 1.00 1.20 0.6176 0.98 0.91 1.06
rs1218825 13 MTIF3 C 0.38 0.2039 5/52/51 19/51/45 0.02356 0.64 0.43 0.95 75/285/240 74/269/192 0.03464 0.85 0.72 0.99 C 0.0660299 0.2515 9/221/1606 11/216/1549 0.7738 0.97 0.81 1.17 0.06751 0.89 0.79 1.01
rs6074898 20 C20orf133 G 0.08 0.1606 01/11/96 3/22/90 0.03311 0.46 0.23 0.92 2/81/517 1/89/445 0.03477 0.74 0.56 0.98 G 0.207192 0.5711 75/593/1169 84/587/1107 0.29 0.94 0.84 1.05 0.07526 0.91 0.82 1.01
Indonesia and Russia Combined
(95% CI)
(95% CI)
(95% CI)

Stage1
Stage2
Indonesia
(95% CI)
Russia
Stage3
rs10510398 3 SRGAP3 G 0.05 1 1/21/86 0/12/103 0.03104 2.17 1.05 4.47 1/63/536 1/44/490 0.0349 1.44 1.02 2.02 G 0.219668 0.06163 85/635/1113 72/637/1068 0.9953 1.00 0.89 1.12 0.5151 1.04 0.93 1.15
rs7041338 9 TXNDC4 C 0.11 0.007857 7/25/76 0/15/100 0.0005227 3.16 1.69 5.92 11/120/468 13/93/433 0.03617 1.29 1.02 1.63 C 0.407141 0.552 321/890/624 273/864/641 0.07169 1.09 0.99 1.20 0.01398 1.12 1.02 1.22
rs984922 20 CBLN4 A 0.14 0.5667 3/28/77 0/18/97 0.009199 2.20 1.20 4.03 10/156/433 7/126/407 0.03652 1.27 1.01 1.58 A 0.230556 0.5422 109/643/1084 86/633/1058 0.4175 1.05 0.94 1.17 0.09857 1.09 0.98 1.20
rs93059 4 NFKB1 A 0.31 0.5326 14/50/44 13/36/66 0.04761 1.53 1.02 2.29 70/245/284 43/229/262 0.03675 1.19 1.01 1.40 A 0.430294 1 349/892/592 323/869/583 0.5614 1.03 0.94 1.13 0.12 1.07 0.98 1.16
rs3923056 12 OR6C76 A 0.38 0.4054 21/58/29 11/53/51 0.002481 1.78 1.21 2.62 85/295/219 78/242/220 0.03711 1.18 1.01 1.38 A 0.380748 0.4212 257/879/698 267/822/687 0.8639 0.99 0.90 1.09 0.346 1.04 0.96 1.13
rs1933703 1 RGS13 A 0.08 1 2/20/86 0/10/105 0.008501 2.75 1.28 5.90 5/90/502 2/73/464 0.03729 1.35 1.02 1.80 A 0.0413669 0.1626 3/134/1700 6/147/1624 0.1627 0.85 0.67 1.07 0.8173 1.02 0.85 1.22
rs7442554 4 C1QTNF7 A 0.25 1 6/36/66 10/58/47 0.005161 0.56 0.37 0.85 37/210/352 35/206/299 0.03756 0.83 0.70 0.99 A 0.354115 0.677 233/844/754 214/818/746 0.506 1.03 0.94 1.14 0.658 0.98 0.90 1.07
rs1990524 4 C1QTNF7 G 0.25 1 6/36/66 10/58/47 0.005161 0.56 0.37 0.85 37/210/352 35/206/299 0.03756 0.83 0.70 0.99 G 0.354213 0.6389 233/846/754 213/818/744 0.5006 1.03 0.94 1.14 0.6649 0.98 0.90 1.07
rs1812576 8 MGC34646 A 0.27 0.7508 4/42/62 14/52/49 0.006329 0.56 0.37 0.86 40/236/322 45/216/278 0.03863 0.84 0.71 0.99 G 0.162607 0.206 46/480/1310 43/517/1217 0.1185 0.91 0.80 1.03 0.9593 1.00 0.90 1.10
rs1343456 9 LINGO2 G 0.09 0.002866 0/9/98 3/18/94 0.01794 0.38 0.17 0.83 15/101/477 8/60/467 0.03864 1.33 1.02 1.74 G 0.296455 0.9098 176/729/928 159/742/877 0.7612 0.98 0.89 1.09 0.6484 1.02 0.93 1.12
rs789350 4 ANAPC10 A 0.26 0.3829 5/42/61 9/58/48 0.02776 0.64 0.42 0.97 41/213/345 35/222/283 0.03883 0.84 0.70 0.99 A 0.344408 0.56 227/834/774 208/784/785 0.2388 1.06 0.96 1.17 0.9887 1.00 0.92 1.09
rs2211533 13 PCDH9 C 0.49 0.4889 17/53/38 35/49/31 0.01955 0.63 0.43 0.92 146/307/143 118/277/142 0.03915 1.17 1.01 1.36 C 0.318157 0.8698 178/813/846 178/774/824 0.9896 1.00 0.91 1.10 0.2559 1.05 0.97 1.14
rs1418267 9 TXNDC4 A 0.12 0.01382 7/25/75 0/15/100 0.0004564 3.19 1.71 5.99 11/120/467 13/94/432 0.03965 1.28 1.01 1.62 A 0.39521 0.6157 305/884/646 255/851/671 0.03682 1.11 1.01 1.22 0.006659 1.13 1.03 1.23
rs1558020 7 N/A C 0.16 0.497 4/37/67 0/25/90 0.003007 2.16 1.27 3.66 15/166/417 14/133/393 0.03967 1.24 1.01 1.53 C 0.267303 0.5011 126/745/965 117/700/959 0.4124 1.05 0.94 1.16 0.09688 1.08 0.99 1.19
rs10488970 4 C1QTNF7 A 0.25 1 6/38/64 10/59/46 0.007232 0.58 0.38 0.87 37/210/351 35/207/298 0.04001 0.83 0.70 0.99 A 0.354172 0.6767 233/844/757 214/817/742 0.5837 1.03 0.93 1.13 0.5946 0.98 0.90 1.06
rs735403 4 MANBA G 0.37 0.5134 20/50/27 15/41/54 0.004567 1.82 1.22 2.71 93/269/237 66/255/216 0.04103 1.18 1.01 1.38 A 0.498063 0.9622 444/934/457 445/888/446 0.8004 0.99 0.90 1.08 0.202 1.05 0.97 1.14
rs725850 7 N/A G 0.16 0.497 4/37/67 0/25/90 0.003007 2.16 1.27 3.66 15/166/418 14/133/393 0.04121 1.24 1.01 1.53 G 0.267249 0.5402 126/745/963 117/698/960 0.3744 1.05 0.94 1.16 0.08652 1.09 0.99 1.19
rs714246 7 N/A G 0.16 0.497 4/37/67 0/25/90 0.003007 2.16 1.27 3.66 15/166/418 14/133/393 0.04121 1.24 1.01 1.53 G 0.267165 0.5401 126/745/966 117/699/959 0.413 1.05 0.94 1.16 0.09852 1.08 0.99 1.19
rs4795858 17 ACCN1 A 0.19 0.4233 3/26/79 8/42/65 0.007692 0.52 0.32 0.83 20/182/397 25/168/347 0.04206 0.82 0.68 0.99 A 0.13029 0.3324 30/433/1374 33/383/1362 0.3174 1.07 0.94 1.23 0.7054 0.98 0.88 1.09
rs7741731 6 EPB41L2 G 0.34 0.7774 9/44/55 22/49/44 0.01237 0.59 0.40 0.88 57/284/258 69/243/227 0.04248 0.85 0.72 0.99 G 0.169065 0.7419 43/516/1277 56/508/1214 0.2389 0.93 0.82 1.05 0.0295 0.90 0.81 0.99
rs10493872 1 ABCD3 A 0.02 1 0/0/108 0/5/110 0.0284 0.00 0.00 nan 0/19/580 0/26/514 0.0428 0.55 0.31 0.99 A 0.262524 0.2151 139/703/993 128/660/990 0.3482 1.05 0.95 1.17 0.5828 1.03 0.93 1.14
rs2333686 1 NCF2 A 0.28 1 9/38/61 14/57/43 0.01069 0.59 0.39 0.88 45/232/321 45/222/273 0.04334 0.84 0.71 0.99 A 0.378079 0.2879 275/849/712 239/855/683 0.6001 1.03 0.93 1.13 0.5821 0.98 0.90 1.06
rs6985962 8 PENK C 0.13 0.8358 3/28/75 0/20/95 0.0178 2.01 1.12 3.61 11/140/448 8/111/416 0.0436 1.26 1.01 1.59 C 0.15423 0.05516 40/517/1279 48/419/1302 0.04708 1.14 1.00 1.29 0.006269 1.17 1.05 1.31
rs717987 6 RUNX2 G 0.19 1 1/28/79 6/40/67 0.01283 0.54 0.33 0.89 22/173/390 22/173/336 0.04363 0.82 0.68 0.99 G 0.152655 2.704E-10 5/545/1287 11/527/1241 #N/A #N/A #N/A #N/A #N/A #N/A #N/A #N/A

rs1107768 3 PDZRN3 A 0.12 0.661 1/36/71 0/23/92 0.01289 1.92 1.10 3.35 11/130/459 5/109/421 0.04366 1.27 1.01 1.60 A 0.237812 0.6064 98/657/1079 109/646/1021 0.2861 0.94 0.85 1.05 0.9165 0.99 0.90 1.10
rs8094618 18 HRH4 G 0.01 0.04117 0/9/90 0/2/106 0.02037 5.10 1.09 23.88 0/16/583 1/8/531 0.04423 1.99 1.00 3.97 G 0.0706973 0.09979 11/240/1585 4/241/1533 0.8228 1.02 0.85 1.22 0.454 1.07 0.90 1.27
rs3897767 5 PRELID2 G 0.11 0.3406 5/23/80 1/18/96 0.0427 1.89 1.05 3.42 8/123/467 3/101/430 0.04437 1.28 1.01 1.63 G 0.289612 0.7731 163/736/935 146/737/893 0.9972 1.00 0.90 1.11 0.4421 1.04 0.94 1.14
rs9314327 8 ADRA1A G 0.13 0.5838 3/14/88 5/33/77 0.009831 0.46 0.26 0.81 11/124/464 8/130/402 0.04451 0.80 0.64 0.99 G 0.235758 0.6918 86/701/1050 94/644/1041 0.7024 1.02 0.92 1.14 0.5903 0.97 0.88 1.07
rs805658 10 SLK C 0.20 0.5834 9/38/58 4/31/79 0.01917 1.76 1.11 2.79 29/198/372 18/174/347 0.04456 1.21 1.00 1.46 C 0.170559 0.04437 56/541/1229 35/504/1232 0.05968 1.13 1.00 1.27 0.0073 1.15 1.04 1.28
rs10510932 3 ADAMTS9 G 0.07 0.2267 0/9/99 1/20/94 0.02467 0.41 0.18 0.91 3/71/526 5/72/455 0.04528 0.74 0.55 0.99 G 0.010122 1 0/34/1802 0/39/1731 0.4507 0.84 0.53 1.33 0.0368 0.77 0.60 0.98
rs4608374 17 MAP2K4 G 0.18 0.348 6/35/67 3/24/88 0.01884 1.85 1.12 3.06 25/171/404 18/142/375 0.04559 1.22 1.00 1.49 G 0.460432 1 395/894/548 380/884/513 0.7205 0.98 0.90 1.08 0.6031 1.02 0.94 1.11
rs7162157 15 KIAA1199 A 0.07 0.3458 0/8/100 1/19/95 0.02045 0.38 0.17 0.88 1/71/527 1/77/462 0.04561 0.73 0.54 0.99 A 0.0981748 0.4937 16/336/1485 19/304/1456 0.5588 1.05 0.90 1.22 0.6898 0.97 0.85 1.12
rs2336980 8 CNBD1 G 0.22 0.1836 1/37/70 12/45/58 0.003224 0.51 0.33 0.80 31/198/369 35/181/324 0.04572 0.83 0.70 1.00 G 0.402189 0.5554 296/865/672 288/870/618 0.3952 0.96 0.87 1.06 0.09513 0.93 0.86 1.01
rs1508394 3 PTPRG A 0.05 1 0/12/95 0/2/112 0.003909 6.71 1.49 30.35 2/64/533 1/48/491 0.04597 1.43 1.00 2.05 A 0.0344398 0.7218 2/121/1714 1/122/1655 0.8397 0.97 0.76 1.26 0.3136 1.11 0.90 1.37
rs1502702 9 C9orf47 G 0.04 1 0/12/96 0/3/112 0.0113 4.45 1.24 16.00 3/46/550 0/37/503 0.04685 1.50 1.00 2.24 G 0.146001 0.5063 43/451/1343 41/436/1299 0.9681 1.00 0.88 1.14 0.5058 1.04 0.92 1.18
rs1461502 11 C11orf63 C 0.45 0.6624 26/60/22 17/54/44 0.00335 1.74 1.19 2.53 132/284/183 101/271/167 0.04721 1.17 1.00 1.36 C 0.401245 0.4933 276/882/679 295/877/606 0.05719 0.91 0.83 1.00 0.556 0.98 0.90 1.06
rs1337005 1 CRB1 G 0.19 0.2322 3/20/85 5/39/71 0.01087 0.51 0.30 0.85 24/175/400 27/166/347 0.04723 0.82 0.68 1.00 G 0.472045 0.7753 409/911/515 401/880/497 0.8665 0.99 0.90 1.09 0.3143 0.96 0.88 1.04
rs10502080 11 GUCY1A2 G 0.43 0.3816 10/51/47 19/62/34 0.01685 0.64 0.43 0.94 101/304/194 101/274/158 0.04762 0.86 0.74 1.00 G 0.406693 0.1834 315/864/650 304/827/641 0.7821 1.01 0.92 1.11 0.4347 0.97 0.89 1.05
rs2912332 18 DSG1 G 0.29 0.59 11/48/43 4/46/59 0.02546 1.59 1.04 2.42 61/235/301 43/209/283 0.048 1.18 1.00 1.40 G 0.106203 0.351 24/367/1445 21/310/1444 0.05673 1.16 1.00 1.35 0.006085 1.17 1.05 1.31
rs6897242 5 PRELID2 G 0.14 0.3594 6/29/73 1/21/93 0.009532 2.11 1.22 3.65 17/146/436 7/133/400 0.04852 1.24 1.00 1.54 G 0.360404 0.607 237/852/748 235/809/733 0.9186 1.01 0.91 1.11 0.3733 1.04 0.95 1.14
rs225563 12 TMEM132B A 0.42 0.5973 15/47/46 27/53/35 0.02454 0.64 0.44 0.93 92/305/203 96/269/170 0.0486 0.86 0.74 1.00 A 0.355519 0.6389 244/835/758 222/797/750 0.4086 1.04 0.95 1.15 0.7239 0.99 0.91 1.07
rs2388847 10 TCERG1L A 0.23 0.04662 2/28/78 9/38/67 0.01257 0.53 0.33 0.86 32/203/364 40/181/319 0.04873 0.83 0.70 1.00 G 0.391443 0.8036 277/879/679 276/842/658 0.8582 0.99 0.90 1.09 0.4451 1.03 0.95 1.12
rs499224 6 N/A A 0.23 0.3516 4/37/66 8/50/56 0.04941 0.65 0.42 1.01 29/209/359 28/208/299 0.04874 0.84 0.70 1.00 A 0.236238 0.146 111/652/1074 109/616/1053 0.7283 1.02 0.91 1.14 0.4577 0.97 0.88 1.06
rs10507336 13 SPATA13 A 0.44 0.3816 25/54/29 16/49/50 0.00683 1.71 1.17 2.50 134/271/194 105/255/180 0.04946 1.16 1.00 1.36 A 0.0803547 0.2688 10/270/1555 8/274/1492 0.6955 0.97 0.82 1.15 0.237 1.07 0.96 1.20
rs3912537 8 MGC34646 G 0.28 0.7519 4/42/62 14/52/49 0.006329 0.56 0.37 0.86 42/235/321 45/217/278 0.04967 0.85 0.71 1.00 C 0.161406 0.2357 45/477/1314 43/513/1220 0.1078 0.90 0.80 1.02 0.887 0.99 0.90 1.10
rs4532251 4 HS3ST1 A 0.32 0.8451 6/50/52 20/47/48 0.04351 0.66 0.44 0.98 61/246/293 57/240/238 0.04975 0.85 0.72 1.00 A 0.316256 0.7806 185/821/829 165/763/848 0.117 1.08 0.98 1.20 0.7791 1.01 0.93 1.10
Legend:
chr- chromosome
LD- linkage disequilibrium
r
2
– R square
D' – D prime
CMH- Cochran-Mantel-Haenszel

p- p-value
OR- odds ratio
95% CI -
95%
confidence