PRINCIPLES OF HLA TYPING;
HLA MATCHING IN HSCT
David Smillie
H & I, NHSBT, Sheffield
Histocompatibility & Immunogenetics
Blood and
Transplant
• successful HSCT depends on many factors
(disease, stage, age, treatment regime etc)
• not least is HLA compatibility between patient
and donor!
Histocompatibility & Immunogenetics
Blood and
Transplant
HLA TYPING REPORT – a collection of letters and
numbers, how do we arrive at this and what use is it?
Histocompatibility & Immunogenetics
Blood and
Transplant
DEFINITIONS
• HLA = Human Leucocyte Antigen
• membrane glycoproteins on all nucleated cells
• 6 ‘classical’ HLA loci, Class I (A,B,C) & Class II (DR,DQ,DP)
each encoded by separate genes
• recognised by the immune system as ‘self’ or ‘non self’
• this determines histocompatibility = acceptance/rejection of foreign
tissue (e.g. transplant) - host vs graft, graft vs host, graft vs
leukaemia)
• cellular immunity
• antibody response
• most polymorphic system in human genome - challenges for HLA
typing and donor selection!
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Blood and
Transplant
AMINO ACID POLYMORPHISM
(this is what the immune system recognises)
HLA molecule
e.g HLA-A1
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e.g HLA-A2
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Transplant
DNA POLYMORPHISM
(resolved by DNA typing)
• SNP = Single Nucleotide Polymorphism
• alleles differ by 1 or more SNP
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HLA ANTIGENS ON NUCLEATED CELLS
DR
DQ
C
DP
B
A
DP
A
B
DQ
DR
Histocompatibility & Immunogenetics
paternal
haplotype
maternal
haplotype
C
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Transplant
INHERITANCE OF HLA HAPLOTYPES
Father + Mother = 4 haplotypes (25% chance of identical sib)
PARENTS
A*
a b
c d
CHILDREN
a/c
a/d
b/c
b/d
Histocompatibility & Immunogenetics
b/r
B*
C* DRB1* DQB1*
(a) 01
08
07
03
02
(b) 03
07
07
15
06
(c) 02
44
05
04
03
(d) 30
13
06
10
05
(r) 02
44
05
10
05
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ORGANISATION OF HLA GENES
CHROMOSOME 6
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HLA TYPING METHODS
1950’s
1960’s
1980’s
1990’s
1999
2000
2000’s
discovery of HLA system
serological typing
first HLA genes cloned, sequenced
DNA/PCR based HLA typing
sequence entire MHC (HGP)
database of all HLA alleles
SBT, Luminex SSO
Histocompatibility & Immunogenetics
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Transplant
HLA TYPING BY SEROLOGY
(Complement Dependent Cytotoxicity - using HLA-A as an example)
anti HLA-A1
• alloantisera
anti HLA-A2
anti HLA-A3
anti HLA-A24
• patient/donor
lymphocytes
(e.g. A2)
• add complement
Histocompatibility & Immunogenetics
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ADVANTAGES OF DNA BASED
TECHNIQUES
• not dependent on cell viability or cell surface
expression of antigens
• standardisation of reagents (synthetic c.f. alloantisera,
complement)
• more accurate and more precise
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3 LEVELS OF RESOLUTION
1. low resolution (2 digit) - identifies broad
families of alleles belonging to the same
serotypic group (e.g. A*02)
2. intermediate resolution (allele string) identifies alleles that have common sequence
determinants and thus share hybridisation
pattern (e.g. A*02:05/08/22)
3. high resolution (minimum 4 digit) - identifies
single allele
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LEVELS OF RESOLUTION FOR HSCT
• European Federation for Immunogenetics (EFI)
Standards v5.6 (stipulated by JACIE)
• related donor - ‘adequate testing to definitively
establish HLA identity by descent’
• unrelated donor - ‘low resolution HLA-A/B/C
(2 digit) and high resolution DRB1 typing (4 digit)’
• confirmatory typing
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HLA TYPING BY DNA
TECHNOLOGY – ACRONYMS!
gene polymorphism detected by:
• primer specificity (PCR-SSP)
• probe specificity (PCR-SSOP) e.g. Luminex
(primers/probes are short lengths of synthetic
DNA which hybridise only to their exact
complementary sequence and this hybridisation
can be detected)
• sequencing based typing (SBT)
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PRINCIPLE OF DNA TYPING
(using HLA-A gene as an example)
A*01
A*02
A*03
allele-specific sequences (primer/probe)
A*24
conserved sequence
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HIGH RESOLUTION HLA TYPING WHY
SEQUENCING BASED TYPING ?
• complete view of HLA gene sequence (cf PCR-SSP,
SSOP etc); detects new alleles
• ‘gold standard’ for HSCT
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DONOR SELECTION
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GUIDELINES FOR HLA MATCHING IN HSCT
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MATCHED DONOR OF CHOICE
1. HLA identical sibling
– confirmed by family studies
– identical for other genes in MHC region
2. HLA identical family member
– differences at other gene loci possible
3. HLA identical unrelated donor
– differences at other gene loci probable
4. HLA mismatched unrelated donor
5. cord blood unit(s)
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Blood and
Transplant
HSCT – TYPICAL HLA TYPING PROTOCOL
PATIENT & FAMILY
LOW RESR HLA-A, B, C, DRB1, DQB1
MATCH
HAPLOTYPE ASSIGNMENT
CONFIRMATORY TESTING
DONOR & RECIPIENT
SBT DRB1 (& TO ESTABLISH
HAPLOTYPES)
TRANSPLANT
Histocompatibility & Immunogenetics
NO MATCH
SBT RECIPIENT HLA-A, B, C,
DRB1, DQB1
MUD SEARCH
BBMR/AN/WBMR/BMDW
SELECT LOW RES MATCHED
DONORS
MUD’s: CONFIRMATORY LOW
RES & SBT HLAA,B,C,DRB1,DQB1, CMV, BLOOD
GROUP etc
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HLA MATCHING IN RELATED HSCT
Histocompatibility & Immunogenetics
Blood and
Transplant
FAMILY WITH 4 HAPLOTYPES
(1 HLA identical sibling)
HLA:
A*
B*
C*
DRB1*
DQB1*
Patient *
02
29
44
51
15
16
07
-
02
-
Sib 1 *
02
29
44
51
15
16
07
-
02
-
Sib 2
24
29
07
44
07
16
07
15
02
06
Sib 3
02
-
13
51
06
15
07
-
02
-
Sib 4
24
29
07
44
07
16
07
15
02
06
Sib 5
02
-
13
51
06
15
07
-
02
-
Sib 6
02
-
13
51
06
15
07
-
02
-
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Transplant
FAMILY WITH 5 HAPLOTYPES
(0 HLA matches!)
A*
HLA:
B*
C*
DRB1*
DQB1*
Patient
02
11
35
52
04
12
01
15
05
06
Sib 1
01
03
07
08
07
-
03
13
02
06
Sib 2
01
11
08
52
07
12
03
15
02
06
Sib 3
01
-
08
-
07
-
03
-
02
-
Sib 4
02
03
07
35
04
07
01
13
05
06
Sib 5
01
03
07
08
07
-
03
13
02
06
Sib 6
01
11
08
52
07
12
03
15
02
06
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Transplant
HLA MATCHING IN UNRELATED HSCT
• donor identification via national/international registries
• best results - allele match at 5 loci (A,B,C,DRB1,DQB1 =10/10)
• Caucasian patients have a 40-50% chance of having a high
resolution matched donor at HLA-A, -B, -C, -DRB1 and -DQB1
(10/10 match)
• the chance of a 10/10 match in other ethnic groupings is lower
• comparable disease free survival in good risk patients
• increased frequency of post-transplant complications
Histocompatibility & Immunogenetics
Blood and
Transplant